Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs56177071 chr7:105165648 C/T 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs56186790 chr19:52784806 G/A 0.00035 174 25.47 28.3 18.2 KM Plot
PCPG rs56190599 chr10:50588867 G/A 4.44E-6 174 24.53 34.93 25.17 KM Plot
PCPG rs56197902 chr10:50527390 G/GA 6.45E-6 171 24.7 31.9 25.17 KM Plot
PCPG rs56203859 chr10:50553146 T/C 3.73E-6 177 24.53 34.37 25.17 KM Plot
PCPG rs56222435 chr17:50297907 A/G 5.9E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs56230603 chr7:105165268 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs56239334 chr7:105165351 G/A 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs56241013 chr2:242185311 T/C 5.62E-5 173 24.17 32.92 9.13 KM Plot
PCPG rs56244291 chr2:241526167 G/A 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs56251768 chr7:105165591 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs56266892 chr1:244155156 T/C 0.000381 171 27.95 20.17 15.8 KM Plot
PCPG rs56268110 chr7:105166712 T/C 6.1E-5 177 20.2 28.95 2.28 KM Plot
PCPG rs56272125 chr11:18139967 G/T 4.13E-6 176 27.2 23.48 10.3 KM Plot
PCPG rs56288505 chr11:46272263 G/A 0.000108 173 25.6 25.57 25.4 KM Plot